Detailed information of SNP:
|
SNP ID:
sf0813682794(Gbrowse)
Chromosome: chr08 Position: 13682794 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 75.85% | 24.15% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 496 | 36.49% | 63.51% |
| Aus | 65 | 70.77% | 29.23% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 17.66% | 82.34% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813682794 | A->G | LOC_Os08g22760(LOC_Os08g22760.1) | Non-Synonymous SNP |