Detailed information of SNP:
|
SNP ID:
sf0813702658(Gbrowse)
Chromosome: chr08 Position: 13702658 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 51.94% | 48.06% |
| All Indica | 798 | 88.97% | 11.03% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813702658 | G->C | LOC_Os08g22790(LOC_Os08g22790.1) | Non-Synonymous SNP |