Detailed information of SNP:
|
SNP ID:
sf0813815181(Gbrowse)
Chromosome: chr08 Position: 13815181 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 93.64% | 6.36% |
| All Indica | 794 | 97.73% | 2.27% |
| All Japonica | 484 | 86.57% | 13.43% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 325 | 85.23% | 14.77% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813815181 | G->A | INTERGENIC | None |