Detailed information of SNP:
|
SNP ID:
sf0813867522(Gbrowse)
Chromosome: chr08 Position: 13867522 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 92.62% | 7.38% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 490 | 81.84% | 18.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 330 | 74.24% | 25.76% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813867522 | A->G | INTERGENIC | None |