Detailed information of SNP:
|
SNP ID:
sf0813868241(Gbrowse)
Chromosome: chr08 Position: 13868241 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 76.26% | 23.74% |
| All Indica | 794 | 98.11% | 1.89% |
| All Japonica | 496 | 36.69% | 63.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 208 | 97.60% | 2.40% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 18.26% | 81.74% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813868241 | A->G | INTERGENIC | None |