Detailed information of SNP:
|
SNP ID:
sf0813871100(Gbrowse)
Chromosome: chr08 Position: 13871100 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 94.90% | 5.10% |
| All Indica | 793 | 95.84% | 4.16% |
| All Japonica | 496 | 92.34% | 7.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813871100 | G->A | LOC_Os08g23050(LOC_Os08g23050.1) | Non-Synonymous SNP |