Detailed information of SNP:
|
SNP ID:
sf0814028837(Gbrowse)
Chromosome: chr08 Position: 14028837 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 55.88% | 44.12% |
| All Indica | 793 | 93.57% | 6.43% |
| All Japonica | 487 | 4.11% | 95.89% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 327 | 4.59% | 95.41% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814028837 | G->A | LOC_Os08g23240(LOC_Os08g23240.1) | Synonymous |