Detailed information of SNP:
|
SNP ID:
sf0814100246(Gbrowse)
Chromosome: chr08 Position: 14100246 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 92.30% | 7.70% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 494 | 81.98% | 18.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 92 | 39.13% | 60.87% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814100246 | G->A | INTERGENIC | None |