Detailed information of SNP:
|
SNP ID:
sf0814182632(Gbrowse)
Chromosome: chr08 Position: 14182632 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1346 | 98.22% | 1.78% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 433 | 96.07% | 3.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 56 | 80.36% | 19.64% |
| Japonica Intermediate | 45 | 86.67% | 13.33% |
| Group VI/Aromatic | 8 | 62.50% | 37.50% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814182632 | T->C | INTERGENIC | None |