Detailed information of SNP:
|
SNP ID:
sf0814217638(Gbrowse)
Chromosome: chr08 Position: 14217638 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 57.62% | 42.38% |
| All Indica | 784 | 28.95% | 71.05% |
| All Japonica | 484 | 97.11% | 2.89% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 367 | 27.52% | 72.48% |
| Indica II | 210 | 31.43% | 68.57% |
| Indica Intermediate | 207 | 28.99% | 71.01% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 87 | 91.95% | 8.05% |
| Japonica Intermediate | 62 | 93.55% | 6.45% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814217638 | G->A | INTERGENIC | None |