Detailed information of SNP:
|
SNP ID:
sf0814217654(Gbrowse)
Chromosome: chr08 Position: 14217654 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1360 | 56.10% | 43.90% |
| All Indica | 759 | 81.82% | 18.18% |
| All Japonica | 485 | 20.62% | 79.38% |
| Aus | 62 | 30.65% | 69.35% |
| Indica I | 352 | 79.83% | 20.17% |
| Indica II | 209 | 83.25% | 16.75% |
| Indica Intermediate | 198 | 83.84% | 16.16% |
| Temperate Japonica | 334 | 15.57% | 84.43% |
| Tropical Japonica | 90 | 31.11% | 68.89% |
| Japonica Intermediate | 61 | 32.79% | 67.21% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814217654 | C->T | INTERGENIC | None |