Detailed information of SNP:
|
SNP ID:
sf0814292992(Gbrowse)
Chromosome: chr08 Position: 14292992 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 70.58% | 29.42% |
| All Indica | 769 | 91.81% | 8.19% |
| All Japonica | 487 | 34.70% | 65.30% |
| Aus | 58 | 84.48% | 15.52% |
| Indica I | 366 | 92.08% | 7.92% |
| Indica II | 204 | 92.16% | 7.84% |
| Indica Intermediate | 199 | 90.95% | 9.05% |
| Temperate Japonica | 331 | 17.22% | 82.78% |
| Tropical Japonica | 92 | 78.26% | 21.74% |
| Japonica Intermediate | 64 | 62.50% | 37.50% |
| Group VI/Aromatic | 9 | 77.78% | 22.22% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814292992 | A->G | LOC_Os08g23620(LOC_Os08g23620.1) | INTRON |