Detailed information of SNP:
|
SNP ID:
sf0814296984(Gbrowse)
Chromosome: chr08 Position: 14296984 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1339 | 90.07% | 9.93% |
| All Indica | 736 | 83.02% | 16.98% |
| All Japonica | 483 | 99.17% | 0.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 348 | 86.78% | 13.22% |
| Indica II | 191 | 74.87% | 25.13% |
| Indica Intermediate | 197 | 84.26% | 15.74% |
| Temperate Japonica | 331 | 99.09% | 0.91% |
| Tropical Japonica | 86 | 98.84% | 1.16% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814296984 | A->G | LOC_Os08g23620(LOC_Os08g23620.1) | Synonymous |