Detailed information of SNP:
|
SNP ID:
sf0814301253(Gbrowse)
Chromosome: chr08 Position: 14301253 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 63.91% | 36.09% |
| All Indica | 785 | 84.33% | 15.67% |
| All Japonica | 481 | 26.82% | 73.18% |
| Aus | 61 | 86.89% | 13.11% |
| Indica I | 367 | 81.74% | 18.26% |
| Indica II | 210 | 86.19% | 13.81% |
| Indica Intermediate | 208 | 87.02% | 12.98% |
| Temperate Japonica | 328 | 10.37% | 89.63% |
| Tropical Japonica | 86 | 73.26% | 26.74% |
| Japonica Intermediate | 67 | 47.76% | 52.24% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814301253 | T->C | LOC_Os08g23630(LOC_Os08g23630.1) | Synonymous |