Detailed information of SNP:
|
SNP ID:
sf0814411454(Gbrowse)
Chromosome: chr08 Position: 14411454 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 52.96% | 47.04% |
| All Indica | 799 | 89.86% | 10.14% |
| All Japonica | 496 | 2.62% | 97.38% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814411454 | T->C | INTERGENIC | None |