Detailed information of SNP:
|
SNP ID:
sf0814540753(Gbrowse)
Chromosome: chr08 Position: 14540753 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1354 | 94.76% | 5.24% |
| All Indica | 737 | 90.50% | 9.50% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 86.46% | 13.54% |
| Indica II | 194 | 98.97% | 1.03% |
| Indica Intermediate | 196 | 89.29% | 10.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814540753 | T->C | LOC_Os08g24050(LOC_Os08g24050.1) | Non-Synonymous SNP |