Detailed information of SNP:
|
SNP ID:
sf0814541506(Gbrowse)
Chromosome: chr08 Position: 14541506 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 87.28% | 12.72% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 471 | 63.27% | 36.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 315 | 54.60% | 45.40% |
| Tropical Japonica | 92 | 84.78% | 15.22% |
| Japonica Intermediate | 64 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814541506 | G->T | LOC_Os08g24050(LOC_Os08g24050.1) | Synonymous |