Detailed information of SNP:
|
SNP ID:
sf0814576288(Gbrowse)
Chromosome: chr08 Position: 14576288 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.98% | 9.02% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814576288 | C->T | INTERGENIC | None |