Detailed information of SNP:
|
SNP ID:
sf0814591782(Gbrowse)
Chromosome: chr08 Position: 14591782 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 84.47% | 15.53% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 496 | 56.85% | 43.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 47.76% | 52.24% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814591782 | G->T | INTERGENIC | None |