Detailed information of SNP:
|
SNP ID:
sf0814637282(Gbrowse)
Chromosome: chr08 Position: 14637282 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 85.06% | 14.94% |
| All Indica | 766 | 88.12% | 11.88% |
| All Japonica | 495 | 79.39% | 20.61% |
| Aus | 63 | 85.71% | 14.29% |
| Indica I | 359 | 87.74% | 12.26% |
| Indica II | 204 | 91.67% | 8.33% |
| Indica Intermediate | 203 | 85.22% | 14.78% |
| Temperate Japonica | 333 | 71.77% | 28.23% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814637282 | A->C | LOC_Os08g24250(LOC_Os08g24250.1) | INTRON |