Detailed information of SNP:
|
SNP ID:
sf0814652290(Gbrowse)
Chromosome: chr08 Position: 14652290 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 92.67% | 7.33% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 83.30% | 16.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814652290 | G->C | LOC_Os08g24280(LOC_Os08g24280.1) | INTRON |
| sf0814652290 | G->C | LOC_Os08g24280(LOC_Os08g24280.1) | SNPs that disrupt splice sites |