Detailed information of SNP:
|
SNP ID:
sf0814666204(Gbrowse)
Chromosome: chr08 Position: 14666204 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 88.37% | 11.63% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 76.86% | 23.14% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 70.15% | 29.85% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814666204 | T->C | INTERGENIC | None |