Detailed information of SNP:
|
SNP ID:
sf0814745609(Gbrowse)
Chromosome: chr08 Position: 14745609 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 98.46% | 1.54% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 441 | 97.05% | 2.95% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 286 | 98.25% | 1.75% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814745609 | T->A | LOC_Os08g24410(LOC_Os08g24410.1) | SNPs that introduce stop codons |