Detailed information of SNP:
|
SNP ID:
sf0814994391(Gbrowse)
Chromosome: chr08 Position: 14994391 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 97.21% | 2.79% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 476 | 92.23% | 7.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 98.76% | 1.24% |
| Tropical Japonica | 92 | 79.35% | 20.65% |
| Japonica Intermediate | 62 | 77.42% | 22.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814994391 | A->T | INTERGENIC | None |