Detailed information of SNP:
|
SNP ID:
sf0814997856(Gbrowse)
Chromosome: chr08 Position: 14997856 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 91.95% | 8.05% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 494 | 81.17% | 18.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 87.76% | 12.24% |
| Tropical Japonica | 92 | 53.26% | 46.74% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814997856 | G->A | LOC_Os08g24770(LOC_Os08g24770.1) | INTRON |