Detailed information of SNP:
|
SNP ID:
sf0814997914(Gbrowse)
Chromosome: chr08 Position: 14997914 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 90.16% | 9.84% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 491 | 82.28% | 17.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 88.36% | 11.64% |
| Tropical Japonica | 88 | 55.68% | 44.32% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0814997914 | T->C | LOC_Os08g24770(LOC_Os08g24770.1) | INTRON |