Detailed information of SNP:
|
SNP ID:
sf0815131190(Gbrowse)
Chromosome: chr08 Position: 15131190 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 68.27% | 31.73% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 497 | 26.16% | 73.84% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 16.12% | 83.88% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815131190 | C->A | LOC_Os08g24960(LOC_Os08g24960.1) | Non-Synonymous SNP |