Detailed information of SNP:
|
SNP ID:
sf0815131191(Gbrowse)
Chromosome: chr08 Position: 15131191 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 67.28% | 32.72% |
| All Indica | 798 | 93.11% | 6.89% |
| All Japonica | 497 | 27.16% | 72.84% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 16.12% | 83.88% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815131191 | G->A | LOC_Os08g24960(LOC_Os08g24960.1) | Synonymous |