Detailed information of SNP:
|
SNP ID:
sf0815147422(Gbrowse)
Chromosome: chr08 Position: 15147422 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1177 | 59.30% | 40.70% |
| All Indica | 616 | 94.32% | 5.68% |
| All Japonica | 454 | 14.54% | 85.46% |
| Aus | 57 | 35.09% | 64.91% |
| Indica I | 292 | 97.26% | 2.74% |
| Indica II | 170 | 90.59% | 9.41% |
| Indica Intermediate | 154 | 92.86% | 7.14% |
| Temperate Japonica | 332 | 11.75% | 88.25% |
| Tropical Japonica | 60 | 36.67% | 63.33% |
| Japonica Intermediate | 62 | 8.06% | 91.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 36 | 61.11% | 38.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815147422 | T->C | LOC_Os08g24980(LOC_Os08g24980.1) | Non-Synonymous SNP |