Detailed information of SNP:
|
SNP ID:
sf0815169966(Gbrowse)
Chromosome: chr08 Position: 15169966 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1154 | 96.36% | 3.64% |
| All Indica | 550 | 94.73% | 5.27% |
| All Japonica | 485 | 98.76% | 1.24% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 242 | 95.04% | 4.96% |
| Indica II | 166 | 94.58% | 5.42% |
| Indica Intermediate | 142 | 94.37% | 5.63% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 86 | 96.51% | 3.49% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815169966 | C->T | INTERGENIC | None |