Detailed information of SNP:
|
SNP ID:
sf0815182766(Gbrowse)
Chromosome: chr08 Position: 15182766 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 97.55% | 2.45% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 469 | 93.60% | 6.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 71 | 64.79% | 35.21% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815182766 | C->T | INTERGENIC | None |