Detailed information of SNP:
|
SNP ID:
sf0815183714(Gbrowse)
Chromosome: chr08 Position: 15183714 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 97.42% | 2.58% |
| All Indica | 789 | 96.45% | 3.55% |
| All Japonica | 492 | 99.80% | 0.20% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 207 | 95.65% | 4.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815183714 | C->T | INTERGENIC | None |