Detailed information of SNP:
|
SNP ID:
sf0815280840(Gbrowse)
Chromosome: chr08 Position: 15280840 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 97.08% | 2.92% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 492 | 91.67% | 8.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 88.36% | 11.64% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 8 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815280840 | G->A | INTERGENIC | None |