Detailed information of SNP:
|
SNP ID:
sf0815303641(Gbrowse)
Chromosome: chr08 Position: 15303641 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 56.20% | 43.80% |
| All Indica | 762 | 28.48% | 71.52% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 66 | 53.03% | 46.97% |
| Indica I | 357 | 23.25% | 76.75% |
| Indica II | 203 | 39.41% | 60.59% |
| Indica Intermediate | 202 | 26.73% | 73.27% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815303641 | G->A | LOC_Os08g25190(LOC_Os08g25190.1) | Non-Synonymous SNP |