Detailed information of SNP:
|
SNP ID:
sf0815400379(Gbrowse)
Chromosome: chr08 Position: 15400379 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 72.91% | 27.09% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 478 | 29.71% | 70.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 319 | 14.11% | 85.89% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 66 | 42.42% | 57.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815400379 | T->C | INTERGENIC | None |