Detailed information of SNP:
|
SNP ID:
sf0815517475(Gbrowse)
Chromosome: chr08 Position: 15517475 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 74.23% | 25.77% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 491 | 28.51% | 71.49% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 16.72% | 83.28% |
| Tropical Japonica | 88 | 76.14% | 23.86% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 8 | 100.00% | 0.00% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815517475 | T->C | INTERGENIC | None |