Detailed information of SNP:
|
SNP ID:
sf0815541078(Gbrowse)
Chromosome: chr08 Position: 15541078 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1331 | 58.98% | 41.02% |
| All Indica | 756 | 81.61% | 18.39% |
| All Japonica | 468 | 16.88% | 83.12% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 357 | 73.11% | 26.89% |
| Indica II | 196 | 89.29% | 10.71% |
| Indica Intermediate | 203 | 89.16% | 10.84% |
| Temperate Japonica | 326 | 3.37% | 96.63% |
| Tropical Japonica | 79 | 70.89% | 29.11% |
| Japonica Intermediate | 63 | 19.05% | 80.95% |
| Group VI/Aromatic | 10 | 70.00% | 30.00% |
| Intermediate | 35 | 65.71% | 34.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815541078 | C->A | INTERGENIC | None |