Detailed information of SNP:
|
SNP ID:
sf0815564092(Gbrowse)
Chromosome: chr08 Position: 15564092 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1354 | 55.47% | 44.53% |
| All Indica | 741 | 84.21% | 15.79% |
| All Japonica | 494 | 13.56% | 86.44% |
| Aus | 63 | 49.21% | 50.79% |
| Indica I | 338 | 89.05% | 10.95% |
| Indica II | 205 | 80.00% | 20.00% |
| Indica Intermediate | 198 | 80.30% | 19.70% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 65 | 13.85% | 86.15% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815564092 | C->T | INTERGENIC | None |