Detailed information of SNP:
|
SNP ID:
sf0815595399(Gbrowse)
Chromosome: chr08 Position: 15595399 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1212 | 59.16% | 40.84% |
| All Indica | 606 | 24.42% | 75.58% |
| All Japonica | 494 | 98.99% | 1.01% |
| Aus | 62 | 66.13% | 33.87% |
| Indica I | 262 | 17.18% | 82.82% |
| Indica II | 170 | 30.00% | 70.00% |
| Indica Intermediate | 174 | 29.89% | 70.11% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815595399 | C->T | LOC_Os08g25624(LOC_Os08g25624.4) | INTRON |
| sf0815595399 | C->T | LOC_Os08g25624(LOC_Os08g25624.1) | INTRON |
| sf0815595399 | C->T | LOC_Os08g25624(LOC_Os08g25624.2) | INTRON |