Detailed information of SNP:
|
SNP ID:
sf0815655483(Gbrowse)
Chromosome: chr08 Position: 15655483 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 85.06% | 14.94% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 497 | 81.09% | 18.91% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815655483 | G->A | INTERGENIC | None |