Detailed information of SNP:
|
SNP ID:
sf0815671009(Gbrowse)
Chromosome: chr08 Position: 15671009 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 87.59% | 12.41% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 497 | 81.49% | 18.51% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815671009 | G->A | INTERGENIC | None |