Detailed information of SNP:
|
SNP ID:
sf0815674706(Gbrowse)
Chromosome: chr08 Position: 15674706 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 72.15% | 27.85% |
| All Indica | 786 | 98.09% | 1.91% |
| All Japonica | 497 | 26.56% | 73.44% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 98.37% | 1.63% |
| Indica II | 206 | 99.03% | 0.97% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815674706 | T->C | LOC_Os08g25750(LOC_Os08g25750.1) | INTRON |