Detailed information of SNP:
|
SNP ID:
sf0815681012(Gbrowse)
Chromosome: chr08 Position: 15681012 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 64.01% | 35.99% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 497 | 7.24% | 92.76% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815681012 | T->C | INTERGENIC | None |