Detailed information of SNP:
|
SNP ID:
sf0815685519(Gbrowse)
Chromosome: chr08 Position: 15685519 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 62.37% | 37.63% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 497 | 10.06% | 89.94% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 12.84% | 87.16% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815685519 | C->T | LOC_Os08g25770(LOC_Os08g25770.1) | INTRON |