Detailed information of SNP:
|
SNP ID:
sf0815686340(Gbrowse)
Chromosome: chr08 Position: 15686340 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 68.41% | 31.59% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 497 | 22.33% | 77.67% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815686340 | C->T | INTERGENIC | None |