Detailed information of SNP:
|
SNP ID:
sf0815709290(Gbrowse)
Chromosome: chr08 Position: 15709290 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.58% | 37.42% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815709290 | T->C | LOC_Os08g25820(LOC_Os08g25820.1) | INTRON |
| sf0815709290 | T->C | LOC_Os08g25820(LOC_Os08g25820.2) | INTRON |