Detailed information of SNP:
|
SNP ID:
sf0815718320(Gbrowse)
Chromosome: chr08 Position: 15718320 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1362 | 87.00% | 13.00% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 441 | 61.68% | 38.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 283 | 50.53% | 49.47% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 64 | 65.62% | 34.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815718320 | C->T | INTERGENIC | None |