Detailed information of SNP:
|
SNP ID:
sf0815756175(Gbrowse)
Chromosome: chr08 Position: 15756175 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.87% | 45.13% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815756175 | A->G | INTERGENIC | None |