Detailed information of SNP:
|
SNP ID:
sf0815767162(Gbrowse)
Chromosome: chr08 Position: 15767162 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 90.56% | 9.44% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 497 | 85.11% | 14.89% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815767162 | G->A | LOC_Os08g25900(LOC_Os08g25900.1) | INTRON |