Detailed information of SNP:
|
SNP ID:
sf0815797846(Gbrowse)
Chromosome: chr08 Position: 15797846 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 84.00% | 16.00% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 72.84% | 27.16% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815797846 | C->G | INTERGENIC | None |